The main class for NetPhorce data

Contains the outputs from the phosphoproteome data analysis, statistical analysis, and network inference, and the necessary data for plotting and data extraction.

Design

Contains data design information and filtering parameters

data.filtered

Contains the data points that passed filtering criteria in a long format.

data.filtered.aov.summary

Contains the anova results in a long format.

regulationData

Contains data associated with regulation check.

netPhorceResults

Contains the network inference data.

networkPlotData

Contains the data needed for network plotting using visNetwork::visNetwork() from the visNetwork package.

Misc

Contains accessory data including default plotting colors and FASTA Keys, if present.